Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 2 curated entries in PaperBLAST's database that match '4.1.1.75' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS06560: acetolactate synthase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
92% cov

AZOBR_RS07965: glyoxylate carboligase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

29% id,
92% cov

AZOBR_RS04230: indole-3-pyruvate decarboxylase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
83% cov

AZOBR_RS29985: pyruvate oxidase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

27% id,
90% cov

AZOBR_RS32510: sulfoacetaldehyde acetyltransferase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

28% id,
64% cov

AZOBR_RS23050: decarboxylase
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa

30% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

890024-892018 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

30% id,
85% cov

658655-660487 (frame +2) on NC_016596.1
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

28% id,
66% cov

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

31% id,
38% cov

684369-685337 (frame -3) on NC_016596.1
is similar to:
PaperBLAST

ARUI_PSEAE / Q9HUI8: Probable 2-ketoarginine decarboxylase AruI; 2-oxo-5-guanidinopentanoate decarboxylase; 5-guanidino-2-oxopentanoate decarboxylase; EC 4.1.1.75 from Pseudomonas aeruginosa
aruI / Q9HUI8: 2-ketoarginine decarboxylase (EC 4.1.1.75) from Pseudomonas aeruginosa
Also see hits to annotated proteins above

31% id,
49% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory