Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 7 curated entries in PaperBLAST's database that match '4.1.2.5' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Azospirillum brasilense Sp245, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2234964-2236385 (frame -3) on NC_016617.1
is similar to:
PaperBLAST

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

48% id,
77% cov

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

48% id,
76% cov

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

48% id,
76% cov

2234792-2235253 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

40% id,
23% cov

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

38% id,
22% cov

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

33% id,
21% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory