Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS02405: isocitrate lyase
is similar to:
PaperBLAST

A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii

67% id,
95% cov

ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum

66% id,
95% cov

ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis
icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis
P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis

65% id,
95% cov

More...

AZOBR_RS27820: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

40% id,
89% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

40% id,
57% cov

ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum

34% id,
23% cov

More...

AZOBR_RS27785: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

39% id,
89% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

31% id,
78% cov

BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis

29% id,
54% cov

More...

AZOBR_RS24315: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

35% id,
89% cov

ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis
icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis
P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis

34% id,
47% cov

A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii

29% id,
53% cov

More...

AZOBR_RS03245: malate synthase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

56% id,
54% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

495019-496479 (frame -2) on NC_016617.1
is similar to:
PaperBLAST

A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii
Also see hits to annotated proteins above

64% id,
100% cov

BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis
Also see hits to annotated proteins above

61% id,
100% cov

ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli
Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli
aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli
Also see hits to annotated proteins above

61% id,
100% cov

More...

253701-256007 (frame -2) on NC_016594.1
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus
Also see hits to annotated proteins above

38% id,
96% cov

404836-406539 (frame -2) on NC_016595.1
is similar to:
PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus
Also see hits to annotated proteins above

38% id,
93% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory