Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS12025: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

A0A124C1Y7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces acidiscabies

58% id,
91% cov

W6JLW3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans

59% id,
89% cov

GOX0437 / Q5FTS6: periplasmic dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans

58% id,
89% cov

More...

AZOBR_RS01765: shikimate 5-dehydrogenase
is similar to:
PaperBLAST

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

36% id,
50% cov

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

36% id,
49% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

38% id,
46% cov

More...

AZOBR_RS03220: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

38% id,
21% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

31% id,
21% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

34% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2527029-2527601 (frame -3) on NC_016617.1
is similar to:
PaperBLAST

W6JLW3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans
Also see hits to annotated proteins above

54% id,
98% cov

GOX0437 / Q5FTS6: periplasmic dehydroquinate dehydratase (EC 4.2.1.10) from Gluconobacter oxydans
Also see hits to annotated proteins above

54% id,
98% cov

684641-685381 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
Also see hits to annotated proteins above

37% id,
6% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory