Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS01080: cysteine synthase
is similar to:
PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

40% id,
99% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

40% id,
99% cov

CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus

43% id,
60% cov

More...

AZOBR_RS08705: cysteine synthase
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

37% id,
95% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

35% id,
98% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

40% id,
65% cov

More...

AZOBR_RS08650: cystathionine beta-lyase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

33% id,
92% cov

AZOBR_RS02140: O-succinylhomoserine sulfhydrylase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

36% id,
83% cov

AZOBR_RS32430: cysteine synthase
is similar to:
PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

28% id,
93% cov

CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus

27% id,
60% cov

AZOBR_RS22490: conserved hypothetical protein with CBS domain
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

32% id,
63% cov

AZOBR_RS00965: hypothetical protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

31% id,
63% cov

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

41% id,
22% cov

AZOBR_RS11340: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

38% id,
52% cov

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

37% id,
39% cov

AZOBR_RS07765: O-acetylhomoserine aminocarboxypropyltransferase
is similar to:
PaperBLAST

CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens

34% id,
41% cov

AZOBR_RS07925: hypothetical protein
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

37% id,
30% cov

AZOBR_RS07905: histidine kinase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

38% id,
26% cov

AZOBR_RS07995: histidine kinase
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

32% id,
30% cov

AZOBR_RS16110: inosine-5`-monophosphate dehydrogenase
is similar to:
PaperBLAST

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

23% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1310205-1310660 (frame -2) on NC_016594.1
is similar to:
PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus
Also see hits to annotated proteins above

24% id,
62% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory