Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 64 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS17090: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

73% id,
99% cov

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

73% id,
99% cov

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

60% id,
99% cov

More...

AZOBR_RS02985: aconitate hydratase
is similar to:
PaperBLAST

ACON_LEGPH / P37032: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; IP210; Iron-responsive protein-like; IRP-like; Major iron-containing protein; MICP; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Legionella pneumophila

67% id,
100% cov

ACNA_ECOLI / P25516: Aconitate hydratase A; ACN; Aconitase; Iron-responsive protein-like; IRP-like; RNA-binding protein; Stationary phase enzyme; EC 4.2.1.3 from Escherichia coli
acnA: aconitate hydratase 1; EC 4.2.1.3 from Escherichia coli
P25516: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

66% id,
99% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

66% id,
99% cov

More...

AZOBR_RS27815: isopropylmalate isomerase
is similar to:
PaperBLAST

ACON_PIG / P16276: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Sus scrofa

29% id,
57% cov

ACON_RAT / Q9ER34: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Rattus norvegicus
Q9ER34: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus

29% id,
57% cov

ACON_BOVIN / P20004: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus

28% id,
57% cov

More...

AZOBR_RS03545: isopropylmalate isomerase
is similar to:
PaperBLAST

Q9P7D4: aconitate hydratase (EC 4.2.1.3) from Schizosaccharomyces pombe

25% id,
49% cov

AZOBR_RS14135: isopropylmalate isomerase
is similar to:
PaperBLAST

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

40% id,
13% cov

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata

33% id,
13% cov

ACNA_SALTY / Q8ZP52: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

30% id,
14% cov

More...

AZOBR_RS15560: isopropylmalate isomerase
is similar to:
PaperBLAST

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Neosartorya fumigata

28% id,
18% cov

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

27% id,
16% cov

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

42% id,
9% cov

More...

AZOBR_RS27810: isopropylmalate isomerase
is similar to:
PaperBLAST

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

33% id,
13% cov

ACO3M_ARATH / Q9SIB9: Aconitate hydratase 3, mitochondrial; Aconitase 3; mACO1; Citrate hydro-lyase 3; EC 4.2.1.3 from Arabidopsis thaliana
Q9SIB9: aconitate hydratase (EC 4.2.1.3) from Arabidopsis thaliana

32% id,
11% cov

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

38% id,
8% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

500818-502902 (frame +1) on NC_016618.1
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator
Also see hits to annotated proteins above

78% id,
78% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Also see hits to annotated proteins above

74% id,
78% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus
Also see hits to annotated proteins above

47% id,
78% cov

More...

500259-501059 (frame +3) on NC_016618.1
is similar to:
PaperBLAST

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator
Also see hits to annotated proteins above

81% id,
24% cov

ACOHC_RAT / Q63270: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Rattus norvegicus
Q63270: aconitate hydratase (EC 4.2.1.3) from Rattus norvegicus
Also see hits to annotated proteins above

38% id,
22% cov

ACO1_ARATH / Q42560: Aconitate hydratase 1; Aconitase 1; Citrate hydro-lyase 1; EC 4.2.1.3 from Arabidopsis thaliana
Also see hits to annotated proteins above

36% id,
22% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory