Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS31260: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

42% id,
99% cov

AZOBR_RS25270: mandelate racemase
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

34% id,
94% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

34% id,
90% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

31% id,
97% cov

More...

AZOBR_RS04900: dehydratase
is similar to:
PaperBLAST

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

33% id,
94% cov

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

32% id,
96% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

30% id,
94% cov

More...

AZOBR_RS26635: mandelate racemase
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

31% id,
93% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli
Q6BF17: galactonate dehydratase (EC 4.2.1.6) from Escherichia coli

31% id,
91% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

31% id,
90% cov

More...

AZOBR_RS15015: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

32% id,
63% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

32% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory