Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 30 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS06795: serine/threonine dehydratase
is similar to:
PaperBLAST

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

37% id,
100% cov

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

37% id,
99% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

40% id,
76% cov

More...

AZOBR_RS01080: cysteine synthase
is similar to:
PaperBLAST

SDSL_MOUSE / Q8R238: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; SDH; EC 4.3.1.17; EC 4.3.1.19 from Mus musculus

26% id,
93% cov

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens

29% id,
50% cov

AZOBR_RS16025: threonine synthase
is similar to:
PaperBLAST

SDSL_HUMAN / Q96GA7: Serine dehydratase-like; L-serine deaminase; L-serine dehydratase/L-threonine deaminase; L-threonine dehydratase; TDH; Serine dehydratase 2; SDH 2; EC 4.3.1.19; EC 4.3.1.17 from Homo sapiens
SDSL / Q96GA7: Serine dehydratase-like (EC 4.3.1.19; EC 4.3.1.17) from Homo sapiens

27% id,
83% cov

AZOBR_RS00525: tryptophan synthase subunit beta
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

26% id,
72% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

28% id,
56% cov

AZOBR_RS07645: diaminopropionate ammonia-lyase
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

26% id,
54% cov

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

26% id,
47% cov

TD_NICAT / Q9AXU4: Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata
Q9AXU4: threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata

26% id,
44% cov

More...

AZOBR_RS08705: cysteine synthase
is similar to:
PaperBLAST

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum

27% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

263398-265116 (frame -2) on NC_016596.1
is similar to:
PaperBLAST

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus
Also see hits to annotated proteins above

53% id,
70% cov

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis
Also see hits to annotated proteins above

53% id,
67% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
Also see hits to annotated proteins above

43% id,
70% cov

More...

2328605-2330167 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus
Also see hits to annotated proteins above

41% id,
84% cov

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis
Also see hits to annotated proteins above

41% id,
82% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
Also see hits to annotated proteins above

44% id,
66% cov

More...

1263907-1264572 (frame -1) on NC_016594.1
is similar to:
PaperBLAST

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus
Also see hits to annotated proteins above

51% id,
53% cov

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis
Also see hits to annotated proteins above

49% id,
50% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
Also see hits to annotated proteins above

42% id,
52% cov

263048-264412 (frame -1) on NC_016596.1
is similar to:
PaperBLAST

Ga0059261_3694: threonine deaminase (EC 4.3.1.19) from Sphingomonas koreensis
Also see hits to annotated proteins above

51% id,
30% cov

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus
Also see hits to annotated proteins above

50% id,
31% cov

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens
Also see hits to annotated proteins above

38% id,
30% cov

1608277-1609614 (frame +1) on NC_016617.1
is similar to:
PaperBLAST

TD_NICAT / Q9AXU4: Threonine dehydratase; Threonine deaminase; EC 4.3.1.19 from Nicotiana attenuata
Q9AXU4: threonine ammonia-lyase (EC 4.3.1.19) from Nicotiana attenuata
Also see hits to annotated proteins above

25% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory