Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 41 curated entries in PaperBLAST's database that match '4.3.3.7' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS08420: dihydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

59% id,
100% cov

Q6G468: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Bartonella henselae

56% id,
100% cov

DAPA_RHIML / Q07607: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; Protein MosA; EC 4.3.3.7 from Rhizobium meliloti
Q07607: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Sinorhizobium meliloti

56% id,
100% cov

More...

AZOBR_RS23300: dihydrodipicolinate synthase
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

35% id,
98% cov

Q7D313: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

33% id,
97% cov

DAPA_NEIMB / Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Neisseria meningitidis
Q9JZR4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Neisseria meningitidis

33% id,
98% cov

More...

AZOBR_RS27060: dihydrodipicolinate synthase (DapA)
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

35% id,
98% cov

DAPA_METJA / Q57695: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Methanocaldococcus jannaschii

34% id,
99% cov

dapA / Q65JG7: dihydrodipicolinate synthase subunit (EC 4.3.3.7) from Bacillus licheniformis

35% id,
93% cov

More...

AZOBR_RS26680: ABC transporter permease
is similar to:
PaperBLAST

DAPA_AGRFC / Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum
Q8UGL3: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

34% id,
98% cov

O67216: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Aquifex aeolicus

33% id,
97% cov

A5F699: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Vibrio cholerae

33% id,
98% cov

More...

AZOBR_RS01580: dihydrodipicolinate reductase
is similar to:
PaperBLAST

Q3MFY8: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Trichormus variabilis

30% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

352176-355583 (frame -3) on NC_016595.1
is similar to:
PaperBLAST

Q7D3Z9: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens
Also see hits to annotated proteins above

50% id,
74% cov

DAPA_MYCTU / P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis
P9WP25: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

31% id,
77% cov

A9CGZ4: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) from Agrobacterium tumefaciens

26% id,
67% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory