Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS16935: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

41% id,
94% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

35% id,
93% cov

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

33% id,
93% cov

More...

AZOBR_RS04385: adenylosuccinate lyase
is similar to:
PaperBLAST

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

23% id,
79% cov

AZOBR_RS28125: 3-carboxy-cis cis-muconate cycloisomerase
is similar to:
PaperBLAST

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

24% id,
71% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory