Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 1 curated entries in PaperBLAST's database that match 'deoxy%ribose dehydrogenase%alpha' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS30035: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

52% id,
100% cov

AZOBR_RS27485: oxidoreductase
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

42% id,
98% cov

AZOBR_RS08565: carbon monoxide dehydrogenase
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

38% id,
100% cov

AZOBR_RS17415: ferredoxin
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

36% id,
95% cov

AZOBR_RS29700: (2Fe-2S)-binding protein
is similar to:
PaperBLAST

C7A11_18890 / A0A1N7UJP4: 2-deoxy-D-ribose dehydrogenase α subunit from Pseudomonas simiae

37% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory