Curated BLAST for Genomes

 

Curated BLAST

Searching in Azospirillum brasilense Sp245 (azobra)

Found 25 curated entries in PaperBLAST's database that match 'sucrose hydrolase' as complete word(s).

These curated entries have 25 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Azospirillum brasilense Sp245, or try another query

AZOBR_RS25735: alpha-amylase
is similar to:
PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase

37% id,
97% cov

AAM42629.1: sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-)

29% id,
54% cov

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

28% id,
49% cov

More...

AZOBR_RS09450: alpha-amylase
is similar to:
PaperBLAST

AAM42629.1: sucrose hydrolase (SuxB;XCC3359) (EC 3.2.1.-)

32% id,
49% cov

AAM38333.1: sucrose hydrolase (XAC3490) (EC 3.2.1.-)

31% id,
48% cov

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

32% id,
47% cov

More...

AZOBR_RS04510: trehalose synthase
is similar to:
PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase

30% id,
50% cov

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex

31% id,
47% cov

AAQ93678.1: sucrose hydrolase (Suh) (EC 3.2.1.-)

31% id,
45% cov

More...

AZOBR_RS16615: alpha-amylase
is similar to:
PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase

27% id,
34% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2545868-2547760 (frame -1) on NC_016617.1
is similar to:
PaperBLAST

6lgaA / A0A077JI83: Bombyx mori gh13 sucrose hydrolase
Also see hits to annotated proteins above

27% id,
34% cov

2814512-2816683 (frame +2) on NC_016617.1
is similar to:
PaperBLAST

3czkA / Q6UVM5: Crystal structure analysis of sucrose hydrolase(suh) e322q-sucrose complex
Also see hits to annotated proteins above

30% id,
27% cov

AAQ93678.1: sucrose hydrolase (Suh) (EC 3.2.1.-)
Also see hits to annotated proteins above

30% id,
26% cov

AAM38333.1: sucrose hydrolase (XAC3490) (EC 3.2.1.-)
Also see hits to annotated proteins above

30% id,
26% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory