Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 1 curated entries in PaperBLAST's database that match '1.1.1.43'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0378: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

40% id,
83% cov

Psest_3223: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

36% id,
89% cov

Psest_0431: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

33% id,
98% cov

Psest_3873: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

35% id,
85% cov

Psest_2548: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

31% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory