Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 42 curated entries in PaperBLAST's database that match '1.1.99.2'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0232: Predicted dehydrogenase
is similar to:
PaperBLAST

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Accumulibacter regalis

64% id,
96% cov

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Achromobacter aegrifaciens

60% id,
99% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC 1.1.99.2 from Arabidopsis thaliana

47% id,
83% cov

More...

Psest_2633: choline dehydrogenase
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

41% id,
99% cov

PDH2_LEUMG / Q3L243: Pyranose dehydrogenase 2; PDH 2; Pyranose:quinone oxidoreductase 2; EC 1.1.99.29 from Leucoagaricus meleagris
Q3L243: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Leucoagaricus meleagris

31% id,
93% cov

PDH1_AGABI / Q3L1D1: Pyranose dehydrogenase; PDH; Glucose dehydrogenase; GDH; Pyranose 2-dehydrogenase; Pyranose:quinone oxidoreductase; EC 1.1.99.29 from Agaricus bisporus
Q3L1D1: pyranose dehydrogenase (acceptor) (EC 1.1.99.29) from Agaricus bisporus

31% id,
92% cov

More...

Psest_2914: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

39% id,
88% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

38% id,
89% cov

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

38% id,
89% cov

Psest_3967: Alcohol dehydrogenase, class IV
is similar to:
PaperBLAST

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

29% id,
97% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

29% id,
97% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum

31% id,
89% cov

More...

Psest_3782: Alcohol dehydrogenase, class IV
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

30% id,
93% cov

HOT_MOUSE / Q8R0N6: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Mus musculus

30% id,
88% cov

HOT_RAT / Q4QQW3: Hydroxyacid-oxoacid transhydrogenase, mitochondrial; HOT; Alcohol dehydrogenase iron-containing protein 1; ADHFe1; EC 1.1.99.24 from Rattus norvegicus

30% id,
88% cov

More...

Psest_0672: Alcohol dehydrogenase, class IV
is similar to:
PaperBLAST

A0A0L0DHP5: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thecamonas trahens

28% id,
95% cov

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina

28% id,
93% cov

W4G0G7: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Aphanomyces astaci

28% id,
92% cov

More...

Psest_2268: Alcohol dehydrogenase, class IV
is similar to:
PaperBLAST

A0A0L0DHP5: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thecamonas trahens

27% id,
91% cov

B7FWP2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Phaeodactylum tricornutum

27% id,
90% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica

26% id,
94% cov

More...

Psest_1423: PQQ-dependent dehydrogenase, methanol/ethanol family
is similar to:
PaperBLAST

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

28% id,
51% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

28% id,
51% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

26% id,
50% cov

Psest_2054: PQQ-dependent dehydrogenase, methanol/ethanol family
is similar to:
PaperBLAST

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

25% id,
49% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

25% id,
49% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

24% id,
49% cov

More...

Psest_2060: PQQ-dependent dehydrogenase, methanol/ethanol family
is similar to:
PaperBLAST

sldA / Q8KIL1: D-sorbitol dehydrogenase large subunit (EC 1.1.99.21) from Gluconobacter thailandicus

28% id,
19% cov

M9MJR9: glycerol dehydrogenase (acceptor) (EC 1.1.99.22) from Gluconobacter thailandicus

28% id,
19% cov

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans

27% id,
18% cov

Psest_1788: TIGR01244 family protein
is similar to:
PaperBLAST

L2HDH_HUMAN / Q9H9P8: L-2-hydroxyglutarate dehydrogenase, mitochondrial; Duranin; EC 1.1.99.2 from Homo sapiens
Q9H9P8: L-2-hydroxyglutarate dehydrogenase (EC 1.1.99.2) from Homo sapiens

26% id,
19% cov

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC 1.1.99.2 from Indibacter alkaliphilus

23% id,
21% cov

Psest_0071: UDP-galactopyranose mutase
is similar to:
PaperBLAST

Q2HXX0: alkan-1-ol dehydrogenase (acceptor) (EC 1.1.99.20) from Ensifer sp.

36% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4133960-4135177 (frame -3) on Psest_Contig47.1
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina
Also see hits to annotated proteins above

30% id,
98% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

30% id,
98% cov

K0T042: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Thalassiosira oceanica
Also see hits to annotated proteins above

27% id,
94% cov

2417134-2418342 (frame -1) on Psest_Contig47.1
is similar to:
PaperBLAST

T0Q1Z2: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia diclina
Also see hits to annotated proteins above

26% id,
99% cov

A0A067BRK4: hydroxyacid-oxoacid transhydrogenase (EC 1.1.99.24) from Saprolegnia parasitica
Also see hits to annotated proteins above

26% id,
99% cov

1531602-1533818 (frame -2) on Psest_Contig47.1
is similar to:
PaperBLAST

Q70JN9: gluconate 5-dehydrogenase (EC 1.1.1.69); D-sorbitol dehydrogenase (acceptor) (subunit 1/2) (EC 1.1.99.21) from Gluconobacter oxydans
Also see hits to annotated proteins above

26% id,
55% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory