Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 6 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0232: Predicted dehydrogenase
is similar to:

L2HDH_ACCRE / A0A011QK89: L-2-hydroxyglutarate dehydrogenase; EC from Accumulibacter regalis

64% id,
96% cov

L2HDH_ACHAE / A0A0M7LBC1: L-2-hydroxyglutarate dehydrogenase; EC from Achromobacter aegrifaciens

60% id,
99% cov

L2HDH_ARATH / Q9LES4: L-2-hydroxyglutarate dehydrogenase, mitochondrial; EC from Arabidopsis thaliana

47% id,
83% cov


Psest_1788: TIGR01244 family protein
is similar to:

L2HDH_HUMAN / Q9H9P8: L-2-hydroxyglutarate dehydrogenase, mitochondrial; Duranin; EC from Homo sapiens
Q9H9P8: L-2-hydroxyglutarate dehydrogenase (EC from Homo sapiens

26% id,
19% cov

L2HDH_INDAL / S2DJ52: L-2-hydroxyglutarate dehydrogenase; EC from Indibacter alkaliphilus

23% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory