Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 24 curated entries in PaperBLAST's database that match '1.2.1.11' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2588: aspartate-semialdehyde dehydrogenase, gamma-proteobacterial
is similar to:
PaperBLAST

DHAS_PSEAE / Q51344: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Pseudomonas aeruginosa

91% id,
100% cov

DHAS_SALTY / P0A1F8: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Salmonella typhimurium

70% id,
100% cov

DHAS_ECOLI / P0A9Q9: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Escherichia coli
Dap / b3433: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Escherichia coli
asd / P0A9Q9: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Escherichia coli

70% id,
100% cov

More...

Psest_2587: Aspartate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

DHAS2_VIBCH / P23247: Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11 from Vibrio cholerae

37% id,
100% cov

asd / Q04797: aspartate semialdehyde dehydrogenase subunit (EC 1.2.1.11) from Bacillus subtilis

32% id,
99% cov

DHAS_MYCTU / P9WNX5: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Mycobacterium tuberculosis
P9WNX5: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) from Mycobacterium tuberculosis

30% id,
99% cov

More...

Psest_3639: N-acetyl-gamma-glutamyl-phosphate reductase, common form
is similar to:
PaperBLAST

DHAS_METJA / Q57658: Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11 from Methanocaldococcus jannaschii
asd / Q57658: aspartate-semialdehyde dehydrogenase monomer (EC 1.2.1.11) from Methanocaldococcus jannaschii

26% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory