Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 3 curated entries in PaperBLAST's database that match '1.2.1.77' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0375: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

29% id,
83% cov

Psest_3654: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

29% id,
85% cov

Psest_4237: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

28% id,
83% cov

Psest_2634: glycine betaine aldehyde dehydrogenase
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

27% id,
84% cov

Psest_3079: delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)
is similar to:
PaperBLAST

BOXD_AROEV / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase; EC 1.2.1.77 from Aromatoleum evansii
boxD / Q84HH8: 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase monomer (EC 1.2.1.77) from Aromatoleum evansii

26% id,
86% cov

Q13WK4: aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5); 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

26% id,
86% cov

Psest_0855: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Q13WK4: aldehyde dehydrogenase [NAD(P)+] (EC 1.2.1.5); 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (NADP+) (EC 1.2.1.77) from Paraburkholderia xenovorans

25% id,
80% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory