Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 11 curated entries in PaperBLAST's database that match '1.3.1.12' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1986: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

J9XQS6: prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium

39% id,
94% cov

TYRC_ZYMMO / Q04983: Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis

37% id,
96% cov

O67636: prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus

38% id,
89% cov

More...

Psest_1984: chorismate mutase domain of proteobacterial P-protein, clade 2
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

33% id,
57% cov

Psest_0178: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
is similar to:
PaperBLAST

novF / Q9L9G2: prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus

29% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2099891-2101372 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
Also see hits to annotated proteins above

33% id,
58% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory