Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 44 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3368: glycine oxidase ThiO
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

33% id,
94% cov

A0A077JN67: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

26% id,
98% cov

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

25% id,
99% cov

More...

Psest_2119: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

27% id,
98% cov

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

24% id,
81% cov

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

48% id,
12% cov

Psest_3795: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

23% id,
95% cov

Psest_3793: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

OXDA_RHOTO / P80324: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Rhodotorula toruloides
P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

43% id,
13% cov

Psest_2554: NADH:flavin oxidoreductases, Old Yellow Enzyme family
is similar to:
PaperBLAST

DAO_BRADU / Q89F89: D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Bradyrhizobium diazoefficiens

47% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory