Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3368: glycine oxidase ThiO
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

33% id,
94% cov

A0A077JN67: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

26% id,
98% cov

Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

27% id,
77% cov

Psest_3795: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

23% id,
95% cov

Psest_2119: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

24% id,
81% cov

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

48% id,
12% cov

Psest_3793: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

43% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory