Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0183: glycine dehydrogenase (decarboxylating)
is similar to:
PaperBLAST

GCSP_ECOLI / P33195: Glycine dehydrogenase (decarboxylating); Glycine cleavage system P-protein; Glycine decarboxylase; Glycine dehydrogenase (aminomethyl-transferring); EC 1.4.4.2 from Escherichia coli
GcvP / b2903: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli
gcvP: glycine dehydrogenase [decarboxylating]; EC 1.4.4.2 from Escherichia coli
gcvP / P33195: glycine decarboxylase (EC 1.4.4.2) from Escherichia coli

65% id,
100% cov

BWI76_RS23870: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Klebsiella michiganensis

64% id,
100% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

62% id,
100% cov

More...

Psest_0182: glycine cleavage system H protein
is similar to:
PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

54% id,
66% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

44% id,
78% cov

Psest_4125: Glycine cleavage system H protein (lipoate-binding)
is similar to:
PaperBLAST

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

38% id,
62% cov

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

36% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory