Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 48 curated entries in PaperBLAST's database that match '1.5.5.2'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 26 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3079: delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

100% id,
100% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

60% id,
100% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

60% id,
99% cov

More...

Psest_3368: glycine oxidase ThiO
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

26% id,
93% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

26% id,
91% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

26% id,
91% cov

More...

Psest_0111: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

24% id,
93% cov

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

50% id,
11% cov

Psest_3795: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

23% id,
98% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

23% id,
99% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

23% id,
92% cov

Psest_1134: alkyl hydroperoxide reductase, F subunit
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

27% id,
75% cov

Psest_0006: alkyl hydroperoxide reductase, F subunit
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
75% cov

Psest_2492: dihydrolipoamide dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

28% id,
65% cov

Psest_3710: glutamate synthase small subunit family protein, proteobacterial
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
70% cov

Psest_1663: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

25% id,
65% cov

Psest_0375: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

32% id,
47% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

32% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

31% id,
45% cov

More...

Psest_2436: methylmalonic acid semialdehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

32% id,
46% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

32% id,
45% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
45% cov

More...

Psest_4237: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

33% id,
43% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

31% id,
45% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

30% id,
45% cov

More...

Psest_3781: methylmalonic acid semialdehyde dehydrogenase
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

30% id,
46% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

30% id,
45% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

30% id,
45% cov

More...

Psest_4305: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

31% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

32% id,
41% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

31% id,
40% cov

More...

Psest_0905: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

30% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

30% id,
44% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

30% id,
44% cov

More...

Psest_3654: succinate-semialdehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
44% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

29% id,
45% cov

More...

Psest_2276: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

29% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

27% id,
43% cov

More...

Psest_2634: glycine betaine aldehyde dehydrogenase
is similar to:
PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

29% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

30% id,
41% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

31% id,
37% cov

More...

Psest_0855: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

27% id,
45% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

26% id,
43% cov

Ac3H11_2850: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Acidovorax sp.

25% id,
41% cov

More...

Psest_0671: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

27% id,
43% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

28% id,
41% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

27% id,
43% cov

More...

Psest_2554: NADH:flavin oxidoreductases, Old Yellow Enzyme family
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

29% id,
39% cov

Psest_0247: NAD-dependent aldehyde dehydrogenases
is similar to:
PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

26% id,
40% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

25% id,
41% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

25% id,
41% cov

More...

Psest_4365: glucose-inhibited division protein A
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
33% cov

Psest_0785: Thioredoxin reductase
is similar to:
PaperBLAST

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

29% id,
26% cov

Psest_3502: flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

40% id,
18% cov

Psest_2119: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

47% id,
8% cov

Q8U022: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

47% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 20 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory