Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 108 curated entries in PaperBLAST's database that match '2.4.1.13' as complete word(s).

These curated entries have 70 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2880: Glycosyltransferase
is similar to:
PaperBLAST

A6LKE9: sucrose synthase (EC 2.4.1.13) from Thermosipho melanesiensis

21% id,
45% cov

Psest_0460: Glycosyltransferase
is similar to:
PaperBLAST

SUS_NITEU / Q820M5: Sucrose synthase; SuSyNe; EC 2.4.1.13 from Nitrosomonas europaea
CAD85125.1: sucrose synthase (Ss2;SuSyNe;NE1214) (EC 2.4.1.13)
Q820M5: sucrose synthase (EC 2.4.1.13) from Nitrosomonas europaea

25% id,
29% cov

SUS_DENA2 / D4H6M0: Sucrose synthase; SuSyDa; EC 2.4.1.13 from Denitrovibrio acetiphilus
ADD69694.1: sucrose synthase (SuSyDa;Dacet_2944) (EC 2.4.1.13)
D4H6M0: sucrose synthase (EC 2.4.1.13) from Denitrovibrio acetiphilus

25% id,
28% cov

P49037: sucrose synthase (EC 2.4.1.13) from Solanum lycopersicum

23% id,
28% cov

More...

Psest_2609: Glycosyltransferase
is similar to:
PaperBLAST

SUS_ACICK / A0A059ZV61: Sucrose synthase; SuSyAc; EC 2.4.1.13 from Acidithiobacillus caldus
AIA55343.1: sucrose synthase (SuSyAc;Acaty_c1477) (EC 2.4.1.13)
A0A059ZV61: sucrose synthase (EC 2.4.1.13) from Acidithiobacillus caldus

26% id,
27% cov

C6H0M2: sucrose synthase (EC 2.4.1.13) from Hordeum vulgare

25% id,
25% cov

BAA89049.1: sucrose synthase (CitSUS1-2) (EC 2.4.1.13)

25% id,
25% cov

More...

Psest_3825: Beta-propeller domains of methanol dehydrogenase type
is similar to:
PaperBLAST

BAA08304.1: sucrose-phosphate synthase (Sps1) (EC 2.4.1.13)

49% id,
3% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory