Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 23 curated entries in PaperBLAST's database that match '2.4.1.7' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2157: trehalose synthase
is similar to:
PaperBLAST

AAC74391.2: sucrose phosphorylase (YcjM) (EC 2.4.1.7)

25% id,
85% cov

Psest_3785: Glycosidases
is similar to:
PaperBLAST

AAC74391.2: sucrose phosphorylase (YcjM) (EC 2.4.1.7)

26% id,
55% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2305499-2308885 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

AAC74391.2: sucrose phosphorylase (YcjM) (EC 2.4.1.7)
Also see hits to annotated proteins above

23% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory