Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 18 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2502: Uncharacterized protein conserved in bacteria
is similar to:

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC; EC from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC; EC; EC; EC; EC from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC; EC; EC from Escherichia coli

50% id,
99% cov

Psest_3523: putative thymidine phosphorylase
is similar to:

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC from Thermus thermophilus

31% id,
91% cov

TYMP / P19971: thymidine phosphorylase monomer (EC; EC from Homo sapiens

29% id,
95% cov

PDP_BACSU / P39142: Pyrimidine-nucleoside phosphorylase; PYNP; Py-NPase; EC from Bacillus subtilis
pdp / GB|CAB15976.2: pyrimidine-nucleoside phosphorylase; EC from Bacillus subtilis

27% id,
92% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory