Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2243: glyceraldehyde-3-phosphate dehydrogenase, type I
is similar to:

TYPH_LACRH / P19663: Thymidine phosphorylase; TdRPase; EC from Lacticaseibacillus rhamnosus

62% id,
91% cov

Psest_2502: Uncharacterized protein conserved in bacteria
is similar to:

PpnP / b0391: nucleoside phosphorylase PpnP (EC; EC; EC; EC; EC from Escherichia coli

50% id,
99% cov

Psest_3523: putative thymidine phosphorylase
is similar to:

Q99N42: thymidine phosphorylase (EC from Mus musculus

30% id,
98% cov

TYPH_HUMAN / P19971: Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC from Homo sapiens
P19971: thymidine phosphorylase (EC from Homo sapiens

29% id,
95% cov

P75052: thymidine phosphorylase (EC from Mycoplasma pneumoniae

24% id,
97% cov

Psest_2377: Anthranilate phosphoribosyltransferase
is similar to:

Q99N42: thymidine phosphorylase (EC from Mus musculus

25% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory