Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 5 curated entries in PaperBLAST's database that match '2.6.1.78' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1004: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus

34% id,
98% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

30% id,
97% cov

PAT_PETHY / E9L7A5: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; PhPPA-AT; EC 2.6.1.1; EC 2.6.1.78; EC 2.6.1.79 from Petunia hybrida

33% id,
83% cov

More...

Psest_1268: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus

37% id,
90% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

29% id,
91% cov

PAT_PETHY / E9L7A5: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; PhPPA-AT; EC 2.6.1.1; EC 2.6.1.78; EC 2.6.1.79 from Petunia hybrida

26% id,
82% cov

More...

Psest_1772: Aspartate/tyrosine/aromatic aminotransferase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus

32% id,
95% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

30% id,
95% cov

PAT_PETHY / E9L7A5: Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; PhPPA-AT; EC 2.6.1.1; EC 2.6.1.78; EC 2.6.1.79 from Petunia hybrida

29% id,
84% cov

More...

Psest_1470: succinyldiaminopimelate transaminase
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus

30% id,
83% cov

AAPAT_CHLTE / Q8KDS8: Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum

26% id,
93% cov

Psest_1570: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
is similar to:
PaperBLAST

AAPAT_THET8 / Q56232: Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.78 from Thermus thermophilus

24% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory