Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 16 curated entries in PaperBLAST's database that match '2.7.1.12' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2123: carbohydrate kinase, thermoresistant glucokinase family
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

100% id,
100% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

42% id,
99% cov

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans

41% id,
98% cov

More...

Psest_3714: Shikimate kinase
is similar to:
PaperBLAST

RR42_RS06130: Gluconokinase (EC 2.7.1.12) from Cupriavidus basilensis

32% id,
82% cov

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

31% id,
46% cov

Q8NMT0: gluconokinase (EC 2.7.1.12) from Corynebacterium glutamicum

44% id,
19% cov

Psest_1987: cytidylate kinase
is similar to:
PaperBLAST

GCNK_GLUOX / Q5FQ97: Gluconokinase; Gluconate kinase; EC 2.7.1.12 from Gluconobacter oxydans

29% id,
76% cov

IDNK / Q5T6J7: gluconokinase monomer (EC 2.7.1.12) from Homo sapiens
Q5T6J7: gluconokinase (EC 2.7.1.12) from Homo sapiens

24% id,
90% cov

Psest_2409: Serine/threonine protein phosphatase
is similar to:
PaperBLAST

Q29502: gluconokinase (EC 2.7.1.12) from Oryctolagus cuniculus

22% id,
67% cov

Psest_1931: Serine/threonine protein phosphatase
is similar to:
PaperBLAST

Q61036: gluconokinase (EC 2.7.1.12); non-specific serine/threonine protein kinase (EC 2.7.11.1) from Mus musculus

24% id,
48% cov

Q29502: gluconokinase (EC 2.7.1.12) from Oryctolagus cuniculus

25% id,
36% cov

Psest_4012: TRAP-type mannitol/chloroaromatic compound transport system, small permease component
is similar to:
PaperBLAST

Psest_2123: fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri

30% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory