Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 114 curated entries in PaperBLAST's database that match '2.7.1.13'.

These curated entries have 82 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1674: tetraacyldisaccharide 4'-kinase
is similar to:
PaperBLAST

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC 2.7.1.130 from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli

47% id,
93% cov

O67572: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Aquifex aeolicus

30% id,
90% cov

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana

31% id,
52% cov

Psest_3354: 1-phosphofructokinase
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

29% id,
97% cov

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

27% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1858122-1858697 (frame -2) on Psest_Contig47.1
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum

24% id,
9% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory