Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 31 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1933: hexose kinase, 1-phosphofructokinase family
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

27% id,
88% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

27% id,
83% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

25% id,
83% cov

More...

Psest_3354: 1-phosphofructokinase
is similar to:
PaperBLAST

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

25% id,
93% cov

Psest_0470: rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II
is similar to:
PaperBLAST

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

28% id,
81% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

26% id,
81% cov

RBSK_YEAST / P25332: Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae

30% id,
33% cov

Psest_3867: ribose 5-phosphate isomerase
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

35% id,
42% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory