Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 17 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_4221: homoserine kinase, Neisseria type
is similar to:

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC from Pseudomonas aeruginosa

68% id,
100% cov

Ga0059261_3253: homoserine kinase (EC from Sphingomonas koreensis

37% id,
97% cov

Psest_3714: Shikimate kinase
is similar to:

thrB / B8DPL9: homoserine kinase (EC from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC: from Desulfovibrio vulgaris

32% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory