Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 207 curated entries in PaperBLAST's database that match '2.7.1.4'.

These curated entries have 161 distinct sequences.

Running ublast with E ≤ 0.01

Found 16 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3190: pyruvate kinase
is similar to:
PaperBLAST

KPYK2_SALTY / Q8ZNW0: Pyruvate kinase II; PK-2; EC 2.7.1.40 from Salmonella typhimurium

58% id,
99% cov

PykA / b1854: pyruvate kinase II (EC 2.7.1.40) from Escherichia coli
pykA / P21599: pyruvate kinase 2 (EC 2.7.1.40) from Escherichia coli

58% id,
99% cov

A0A0H3JER5: pyruvate kinase (EC 2.7.1.40) from Escherichia coli

58% id,
99% cov

More...

Psest_1177: pyruvate kinase
is similar to:
PaperBLAST

KPYK_MYCTU / P9WKE5: Pyruvate kinase; PK; EC 2.7.1.40 from Mycobacterium tuberculosis
P9WKE5: pyruvate kinase (EC 2.7.1.40) from Mycobacterium tuberculosis

41% id,
98% cov

Q46078: pyruvate kinase (EC 2.7.1.40) from Corynebacterium glutamicum

40% id,
98% cov

A0A0H3JER5: pyruvate kinase (EC 2.7.1.40) from Escherichia coli

40% id,
98% cov

More...

Psest_0537: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
is similar to:
PaperBLAST

Q5SKG3: hydroxymethylpyrimidine kinase (EC 2.7.1.49); phosphooxymethylpyrimidine kinase (EC 2.7.4.7) from Thermus thermophilus

36% id,
98% cov

THID_MYCTU / P9WG77: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Hydroxymethylpyrimidine kinase; HMP kinase; Hydroxymethylpyrimidine phosphate kinase; HMP-P kinase; HMP-phosphate kinase; HMPP kinase; EC 2.7.1.49; EC 2.7.4.7 from Mycobacterium tuberculosis

38% id,
93% cov

D4GV38: hydroxymethylpyrimidine kinase (EC 2.7.1.49); phosphooxymethylpyrimidine kinase (EC 2.7.4.7) from Haloferax volcanii

37% id,
91% cov

More...

Psest_3354: 1-phosphofructokinase
is similar to:
PaperBLAST

Q0K080: dehydrogluconokinase (EC 2.7.1.13); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Cupriavidus necator

29% id,
97% cov

Pf6N2E2_1965: Fructokinase (EC 2.7.1.4) from Pseudomonas fluorescens

28% id,
93% cov

KDGK_BACSU / P50845: 2-dehydro-3-deoxygluconokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; EC 2.7.1.45 from Bacillus subtilis

26% id,
97% cov

More...

Psest_3109: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

A0A0H3C585: fructokinase (EC 2.7.1.4) from Halothermothrix orenii

28% id,
98% cov

Psest_2720: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

A0A0H3C585: fructokinase (EC 2.7.1.4) from Halothermothrix orenii

28% id,
89% cov

Psest_2076: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

A0A0H3C585: fructokinase (EC 2.7.1.4) from Halothermothrix orenii

26% id,
99% cov

Psest_2654: fatty oxidation complex, alpha subunit FadB
is similar to:
PaperBLAST

A0A0H3C585: fructokinase (EC 2.7.1.4) from Halothermothrix orenii

23% id,
98% cov

Psest_4235: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

A0A0H3C585: fructokinase (EC 2.7.1.4) from Halothermothrix orenii

30% id,
72% cov

Psest_1933: hexose kinase, 1-phosphofructokinase family
is similar to:
PaperBLAST

Q9LNE4: fructokinase (EC 2.7.1.4) from Arabidopsis thaliana

22% id,
83% cov

Psest_3355: phosphoenolpyruvate-protein phosphotransferase
is similar to:
PaperBLAST

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

23% id,
78% cov

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

22% id,
57% cov

P51182: pyruvate kinase (EC 2.7.1.40) from Sporosarcina psychrophila

36% id,
18% cov

Psest_2316: phosphoenolpyruvate synthase
is similar to:
PaperBLAST

Q6GG09: pyruvate kinase (EC 2.7.1.40) from Staphylococcus aureus

22% id,
72% cov

KPYK_GEOSE / Q02499: Pyruvate kinase; PK; ATP:pyruvate 2-O-phosphotransferase; EC 2.7.1.40 from Geobacillus stearothermophilus
Q02499: pyruvate kinase (EC 2.7.1.40) from Geobacillus stearothermophilus

27% id,
50% cov

P51181: pyruvate kinase (EC 2.7.1.40) from Bacillus licheniformis

27% id,
49% cov

Psest_1120: uracil phosphoribosyltransferase
is similar to:
PaperBLAST

UKL5_ARATH / Q9LTY6: Uridine kinase-like protein 5; EC 2.7.1.48; EC 2.4.2.9 from Arabidopsis thaliana

32% id,
42% cov

UKL1_ARATH / Q9FKS0: Uridine/cytidine kinase UKL1, chloroplastic; AtUK; Uridine kinase-like protein 1; Uridine/cytidine kinase 1; EC 2.7.1.48 from Arabidopsis thaliana
Q9FKS0: uracil phosphoribosyltransferase (EC 2.4.2.9); uridine/cytidine kinase (EC 2.7.1.48) from Arabidopsis thaliana

32% id,
42% cov

UKL2_ARATH / Q9LK34: Uridine/cytidine kinase UKL1, chloroplastic; Uridine kinase-like protein 2; Uridine/cytidine kinase 2; EC 2.7.1.48 from Arabidopsis thaliana

31% id,
41% cov

More...

Psest_0536: thiamine-phosphate pyrophosphorylase
is similar to:
PaperBLAST

TPS1_BRANA / O48881: Thiamine biosynthetic bifunctional enzyme BTH1, chloroplastic; EC 2.5.1.3; EC 2.7.1.49 from Brassica napus
O48881: hydroxymethylpyrimidine kinase (EC 2.7.1.49); phosphooxymethylpyrimidine kinase (EC 2.7.4.7) from Brassica napus

37% id,
36% cov

TPS1L_ARATH / Q5M731: Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic; EC 2.5.1.3; EC 2.7.1.49 from Arabidopsis thaliana
TH1 / Q5M731: 4-amino-2-methyl-5-phosphomethylpyrimidine kinase (EC 2.7.1.49; EC 2.5.1.3; EC 2.7.4.7) from Arabidopsis thaliana

36% id,
36% cov

Psest_2064: ABC-type uncharacterized transport system, duplicated ATPase component
is similar to:
PaperBLAST

Q5SKR5: uridine/cytidine kinase (EC 2.7.1.48) from Thermus thermophilus

31% id,
29% cov

Psest_3862: phosphoenolpyruvate-protein phosphotransferase
is similar to:
PaperBLAST

A0A1D3TRL9: pyruvate kinase (EC 2.7.1.40) from Anaerobium acetethylicum

26% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1213649-1214341 (frame -3) on Psest_Contig47.1
is similar to:
PaperBLAST

UKL1_ARATH / Q9FKS0: Uridine/cytidine kinase UKL1, chloroplastic; AtUK; Uridine kinase-like protein 1; Uridine/cytidine kinase 1; EC 2.7.1.48 from Arabidopsis thaliana
Q9FKS0: uracil phosphoribosyltransferase (EC 2.4.2.9); uridine/cytidine kinase (EC 2.7.1.48) from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
43% cov

UKL2_ARATH / Q9LK34: Uridine/cytidine kinase UKL1, chloroplastic; Uridine kinase-like protein 2; Uridine/cytidine kinase 2; EC 2.7.1.48 from Arabidopsis thaliana
Also see hits to annotated proteins above

32% id,
42% cov

UCKL1_HUMAN / Q9NWZ5: Uridine-cytidine kinase-like 1; EC 2.7.1.48 from Homo sapiens
Q9NWZ5: uridine/cytidine kinase (EC 2.7.1.48) from Homo sapiens
Also see hits to annotated proteins above

28% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory