Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 61 curated entries in PaperBLAST's database that match '2.7.2.1'.

These curated entries have 39 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3137: phosphoribosylglycinamide formyltransferase 2
is similar to:
PaperBLAST

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli
purT / P33221: phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15) from Escherichia coli

65% id,
100% cov

Psest_3213: acetate kinase
is similar to:
PaperBLAST

E3W769: acetate kinase (EC 2.7.2.1) from Shewanella sp.

51% id,
100% cov

G4T0C7: acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum

50% id,
98% cov

ACKA_SALTY / P63411: Acetate kinase AckA; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium
P63411: acetate kinase (EC 2.7.2.1) from Salmonella enterica

48% id,
100% cov

More...

Psest_3384: glutamate 5-kinase
is similar to:
PaperBLAST

PROB_ECOLI / P0A7B5: Glutamate 5-kinase; Gamma-glutamyl kinase; GK; EC 2.7.2.11 from Escherichia coli
ProB / b0242: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
proB: glutamate 5-kinase; EC 2.7.2.11 from Escherichia coli
proB / P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli
P0A7B5: glutamate 5-kinase (EC 2.7.2.11) from Escherichia coli

43% id,
99% cov

Q6E235: glutamate 5-kinase (EC 2.7.2.11) from Bacillus subtilis

39% id,
97% cov

G5K_LEIDO / A0A0R6Y3I5: Glutamate 5-kinase; LdG5K; Gamma-glutamyl kinase; EC 2.7.2.11 from Leishmania donovani

36% id,
100% cov

More...

Psest_3807: acetylglutamate kinase
is similar to:
PaperBLAST

LYSZ_THET2 / O50147: [LysW]-aminoadipate kinase; EC 2.7.2.17 from Thermus thermophilus

29% id,
99% cov

Psest_0508: gamma-glutamyl phosphate reductase
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

40% id,
56% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

38% id,
58% cov

P5CS2_ORYSJ / Q941T1: Delta-1-pyrroline-5-carboxylate synthase 2; OsP5CS2; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

38% id,
54% cov

More...

Psest_0270: carbamate kinase
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

34% id,
15% cov

P5CS1_ORYSJ / O04226: Delta-1-pyrroline-5-carboxylate synthase 1; OsP5CS1; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

36% id,
14% cov

P5CS2_ORYSJ / Q941T1: Delta-1-pyrroline-5-carboxylate synthase 2; OsP5CS2; EC 2.7.2.11; EC 1.2.1.41 from Oryza sativa

36% id,
14% cov

Psest_2840: uridylate kinase
is similar to:
PaperBLAST

P5CS1 / P54887: δ1-pyrroline-5-carboxylate synthetase (EC 1.2.1.41; EC 2.7.2.11) from Arabidopsis thaliana

36% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory