Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 31 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 23 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3137: phosphoribosylglycinamide formyltransferase 2
is similar to:

PurT / b1849: phosphoribosylglycinamide formyltransferase 2 (EC; EC from Escherichia coli

65% id,
100% cov

Psest_3213: acetate kinase
is similar to:

E3W769: acetate kinase (EC from Shewanella sp.

51% id,
100% cov

G4T0C7: acetate kinase (EC from Methylotuvimicrobium alcaliphilum

50% id,
98% cov

ACKA_SALTY / P63411: Acetate kinase AckA; Acetokinase; EC from Salmonella typhimurium
P63411: acetate kinase (EC from Salmonella enterica

48% id,
100% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory