Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 79 curated entries in PaperBLAST's database that match '2.7.7.9'.

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3663: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
is similar to:
PaperBLAST

MURU_PSEPK / Q88QT2: N-acetylmuramate alpha-1-phosphate uridylyltransferase; MurNAc-1P uridylyltransferase; MurNAc-alpha-1P uridylyltransferase; EC 2.7.7.99 from Pseudomonas putida
murU / Q88QT2: N-acetyl-α-D-muramate 1-phosphate uridylyltransferase (EC 2.7.7.99) from Pseudomonas putida
Q88QT2: N-acetyl-alpha-D-muramate 1-phosphate uridylyltransferase (EC 2.7.7.99) from Pseudomonas putida

75% id,
100% cov

MURU_PSEAE / Q9I5U0: N-acetylmuramate alpha-1-phosphate uridylyltransferase; MurNAc-1P uridylyltransferase; MurNAc-alpha-1P uridylyltransferase; EC 2.7.7.99 from Pseudomonas aeruginosa

71% id,
98% cov

MURU_NEIMB / Q9JXY0: N-acetylmuramate alpha-1-phosphate uridylyltransferase; MurNAc-1P uridylyltransferase; MurNAc-alpha-1P uridylyltransferase; EC 2.7.7.99 from Neisseria meningitidis

56% id,
99% cov

More...

Psest_2232: UTP-glucose-1-phosphate uridylyltransferase
is similar to:
PaperBLAST

O25363: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Helicobacter pylori

66% id,
99% cov

GTAB_STAA8 / Q2G1T6: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; UDP-glucose pyrophosphorylase; UDPGP; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Staphylococcus aureus

49% id,
91% cov

GTAB_BACSU / Q05852: UTP--glucose-1-phosphate uridylyltransferase; Alpha-D-glucosyl-1-phosphate uridylyltransferase; General stress protein 33; GSP33; UDP-glucose pyrophosphorylase; UDPGP; UGPase; Uridine diphosphoglucose pyrophosphorylase; EC 2.7.7.9 from Bacillus subtilis

49% id,
90% cov

More...

Psest_1676: 3-deoxy-D-manno-octulosonate cytidylyltransferase
is similar to:
PaperBLAST

KDSB_SHEON / Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase; CMP-8-amino-3,8-dideoxy-manno-octulosonate synthase; EC 2.7.7.90 from Shewanella oneidensis
kdsB / Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.90) from Shewanella oneidensis
Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.90) from Shewanella oneidensis

45% id,
98% cov

Psest_4263: glucose-1-phosphate thymidylyltransferase, short form
is similar to:
PaperBLAST

AGLF_HALVD / D4GYH1: UTP--glucose-1-phosphate uridylyltransferase AglF; Archaeal glycosylation protein F; EC 2.7.7.9 from Haloferax volcanii

30% id,
97% cov

Q8YS18: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Nostoc sp.

24% id,
85% cov

A0A0H2ZMV4: UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) from Streptococcus pneumoniae

26% id,
78% cov

More...

Psest_2444: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

MHAA_STRAQ / P80435: 3-hydroxy-4-methylanthranilate adenylyltransferase; 4-MHA-activating enzyme; 4-methyl-3-hydroxyanthranilic acid-AMP ligase; 4-MHA-AMP ligase; Actinomycin synthetase I; ACMS I; EC 2.7.7.97 from Streptomyces anulatus

26% id,
88% cov

Psest_4072: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

MHAA_STRAQ / P80435: 3-hydroxy-4-methylanthranilate adenylyltransferase; 4-MHA-activating enzyme; 4-methyl-3-hydroxyanthranilic acid-AMP ligase; 4-MHA-AMP ligase; Actinomycin synthetase I; ACMS I; EC 2.7.7.97 from Streptomyces anulatus

30% id,
72% cov

Psest_1812: pseudaminic acid CMP-transferase
is similar to:
PaperBLAST

KDSB_SHEON / Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase; CMP-8-amino-3,8-dideoxy-manno-octulosonate synthase; EC 2.7.7.90 from Shewanella oneidensis
kdsB / Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.90) from Shewanella oneidensis
Q8EEA9: 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.90) from Shewanella oneidensis

28% id,
61% cov

Q99KK2: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Mus musculus

34% id,
49% cov

cmas / Q90WG6: 2-keto-3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss
Q90WG6: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss

33% id,
49% cov

Psest_3309: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family
is similar to:
PaperBLAST

Q99KK2: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Mus musculus

34% id,
35% cov

cmas / Q90WG6: 2-keto-3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss
Q90WG6: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss

31% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1911844-1912566 (frame +1) on Psest_Contig47.1
is similar to:
PaperBLAST

Q99KK2: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Mus musculus
Also see hits to annotated proteins above

34% id,
53% cov

cmas / Q90WG6: 2-keto-3-deoxy-D-glycero-D-galacto-nononate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss
Q90WG6: N-acylneuraminate cytidylyltransferase (EC 2.7.7.43); 3-deoxy-D-glycero-D-galacto-nonulopyranosonate cytidylyltransferase (EC 2.7.7.92) from Oncorhynchus mykiss
Also see hits to annotated proteins above

33% id,
50% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory