Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 141 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2327: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

88% id,
100% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

92% id,
86% cov

Psest_0489: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

47% id,
96% cov

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

46% id,
96% cov

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

44% id,
98% cov

More...

Psest_3873: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

56% id,
64% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

40% id,
24% cov

Psest_3768: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

30% id,
96% cov

Psest_0972: ATP-dependent metalloprotease FtsH
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

43% id,
66% cov

Psest_0676: ATP-dependent metalloprotease FtsH
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

44% id,
63% cov

Psest_3821: ATP-dependent Zn proteases
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

42% id,
63% cov

Psest_3864: HAD-superfamily subfamily IB hydrolase, TIGR01490
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

33% id,
70% cov

SERB_RHOFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Rhodoferax ferrireducens

26% id,
83% cov

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

23% id,
90% cov

More...

Psest_3956: Fructose-1,6-bisphosphatase
is similar to:
PaperBLAST

A8DUA7: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Morus alba

30% id,
75% cov

P46284: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

28% id,
77% cov

Psest_3005: Fructose-2,6-bisphosphatase
is similar to:
PaperBLAST

PSPB_HYDTT / D3DFP8: Putative phosphoserine phosphatase 2; PSP 2; PSPase 2; Metal-independent phosphoserine phosphatase 2; iPSP2; O-phosphoserine phosphohydrolase 2; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFP8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

27% id,
83% cov

Psest_3642: ATPases of the AAA+ class
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

28% id,
77% cov

Psest_0562: magnesium-translocating P-type ATPase
is similar to:
PaperBLAST

Q99LS3: phosphoserine phosphatase (EC 3.1.3.3) from Mus musculus

32% id,
64% cov

Q5M819: phosphoserine phosphatase (EC 3.1.3.3) from Rattus norvegicus

31% id,
64% cov

SERB_HUMAN / P78330: Phosphoserine phosphatase; PSP; PSPase; L-3-phosphoserine phosphatase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Homo sapiens
PSPH / P78330: L-3-phosphoserine phosphatase (EC 3.1.3.3) from Homo sapiens

31% id,
64% cov

Psest_2285: ATP-dependent protease La
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

21% id,
93% cov

Psest_0442: ATPases of the AAA+ class
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

32% id,
58% cov

Psest_0378: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
49% cov

Psest_3223: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
46% cov

Psest_4064: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

26% id,
50% cov

Psest_0431: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

26% id,
49% cov

Psest_2548: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

35% id,
24% cov

Psest_2286: endopeptidase Clp ATP-binding regulatory subunit (clpX)
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

29% id,
24% cov

Psest_1247: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family
is similar to:
PaperBLAST

Q42546: nucleotidase (EC 3.1.3.31); inositol-1,4-bisphosphate 1-phosphatase (EC 3.1.3.57); 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) from Arabidopsis thaliana

32% id,
18% cov

Psest_3937: ATP-dependent protease HslVU, ATPase subunit
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

33% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 21 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4044334-4045623 (frame +1) on Psest_Contig47.1
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

54% id,
67% cov

4035929-4036819 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

32% id,
76% cov

4121917-4122960 (frame -1) on Psest_Contig47.1
is similar to:
PaperBLAST

P46284: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

28% id,
85% cov

467936-469834 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

24% id,
62% cov

104238-105500 (frame -2) on Psest_Contig47.1
is similar to:
PaperBLAST

INPP5J / Q15735: phosphatidylinositol-4,5-bisphosphate 5-phosphatase, A (EC 3.1.3.56; EC 3.1.3.36) from Homo sapiens

27% id,
27% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory