Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 138 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 107 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2327: phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

88% id,
100% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

92% id,
86% cov

Psest_0489: phosphoserine phosphatase SerB
is similar to:
PaperBLAST

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

47% id,
96% cov

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

46% id,
96% cov

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

44% id,
98% cov

More...

Psest_3873: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

56% id,
64% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

40% id,
24% cov

Psest_3768: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

30% id,
96% cov

Psest_3864: HAD-superfamily subfamily IB hydrolase, TIGR01490
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

33% id,
70% cov

SERB_ALBFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Albidiferax ferrireducens

26% id,
83% cov

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

23% id,
90% cov

More...

Psest_3956: Fructose-1,6-bisphosphatase
is similar to:
PaperBLAST

A8DUA7: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Morus alba

30% id,
75% cov

P46283: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Arabidopsis thaliana

30% id,
75% cov

A8IRK4: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

29% id,
77% cov

More...

Psest_3005: Fructose-2,6-bisphosphatase
is similar to:
PaperBLAST

PSPB_HYDTT / D3DFP8: Putative phosphoserine phosphatase 2; PSP 2; PSPase 2; Metal-independent phosphoserine phosphatase 2; iPSP2; O-phosphoserine phosphohydrolase 2; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFP8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

27% id,
83% cov

Psest_0562: magnesium-translocating P-type ATPase
is similar to:
PaperBLAST

Q99LS3: phosphoserine phosphatase (EC 3.1.3.3) from Mus musculus

32% id,
64% cov

Q5M819: phosphoserine phosphatase (EC 3.1.3.3) from Rattus norvegicus

31% id,
64% cov

SERB_HUMAN / P78330: Phosphoserine phosphatase; PSP; PSPase; L-3-phosphoserine phosphatase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Homo sapiens
PSPH / P78330: L-3-phosphoserine phosphatase (EC 3.1.3.3) from Homo sapiens
P78330: phosphoserine phosphatase (EC 3.1.3.3) from Homo sapiens

31% id,
64% cov

Psest_2710: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
is similar to:
PaperBLAST

O07014: phosphoserine phosphatase (EC 3.1.3.3) from Bacillus subtilis

27% id,
75% cov

Psest_0378: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
49% cov

Psest_3223: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
46% cov

Psest_4064: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

26% id,
50% cov

Psest_0431: Lactate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

26% id,
49% cov

Psest_2548: Phosphoglycerate dehydrogenase and related dehydrogenases
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

35% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 5 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4044334-4045623 (frame +1) on Psest_Contig47.1
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

54% id,
67% cov

4035929-4036819 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis
Also see hits to annotated proteins above

32% id,
76% cov

4121917-4122960 (frame -1) on Psest_Contig47.1
is similar to:
PaperBLAST

A8IRK4: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

29% id,
82% cov

P46284: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

28% id,
85% cov

C5IU71: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Solanum lycopersicum
Also see hits to annotated proteins above

28% id,
82% cov

More...

467936-469834 (frame +2) on Psest_Contig47.1
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

24% id,
62% cov

104238-105500 (frame -2) on Psest_Contig47.1
is similar to:
PaperBLAST

INPP5J / Q15735: phosphatidylinositol-4,5-bisphosphate 5-phosphatase, A (EC 3.1.3.56; EC 3.1.3.36) from Homo sapiens

27% id,
27% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory