Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 529 curated entries in PaperBLAST's database that match '3.2.1.21' as complete word(s).

These curated entries have 444 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1575: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

YohA / b2132: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli
bglX / P33363: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli

59% id,
98% cov

AAL21070.1: β-glucosidase (BglX;STM2166) (EC 3.2.1.21)

59% id,
98% cov

AAA60495.1: β-glucosidase (BglX) (EC 3.2.1.21)

59% id,
95% cov

More...

Psest_2643: Beta-glucosidase-related glycosidases
is similar to:
PaperBLAST

AEF56853.1: β-glucosidase A3 (EC 3.2.1.21)

29% id,
55% cov

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC 3.2.1.21; EC 3.2.1.52 from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC 3.2.1.21|3.2.1.52|2.4.1.-)

27% id,
47% cov

AEW47970.1: β-glucosidase (H1_GH3) (EC 3.2.1.21)

30% id,
29% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1259927-1260580 (frame -3) on Psest_Contig47.1
is similar to:
PaperBLAST

AAA23091.1: β-glucosidase (EC 3.2.1.21)

32% id,
22% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory