Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 134 curated entries in PaperBLAST's database that match '3.2.1.28'.

These curated entries have 79 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0358: Neutral trehalase
is similar to:		 PaperBLAST

TREF_ECOLI / P62601: Cytoplasmic trehalase; Alpha,alpha-trehalase; Alpha,alpha-trehalose glucohydrolase; EC 3.2.1.28 from Escherichia coli
TreF / b3519: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli
AAC76544.1: trehalase (TreF;b3519) (EC 3.2.1.28)
treF / P62601: cytoplasmic trehalase (EC 3.2.1.28) from Escherichia coli

 57% id,
93% cov

D4I261: alpha,alpha-trehalase (EC 3.2.1.28) from Erwinia amylovora

 56% id,
95% cov

Q3BXX2: alpha,alpha-trehalase (EC 3.2.1.28) from Xanthomonas campestris

 58% id,
91% cov

More...

Psest_0870: Glycosidases
is similar to:		 PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

 56% id,
90% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 42% id,
93% cov

Psest_3785: Glycosidases
is similar to:		 PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 45% id,
99% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

 41% id,
96% cov

Psest_3786: Glycosidases
is similar to:		 PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 38% id,
64% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

 37% id,
60% cov

Psest_2157: trehalose synthase
is similar to:		 PaperBLAST

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 36% id,
63% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

 46% id,
41% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 35% id,
23% cov

Psest_0862: Glycosidases
is similar to:		 PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

 30% id,
30% cov

AAS80455.1: α,α-trehalase / α-glucosidase (TTC0107) (EC 3.2.1.20|3.2.1.28)

 33% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory