Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 14 curated entries in PaperBLAST's database that match '3.2.1.48'.

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0870: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

56% id,
90% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

31% id,
30% cov

Psest_3785: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

41% id,
96% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

27% id,
70% cov

Psest_3786: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

37% id,
60% cov

Psest_2157: trehalose synthase
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

46% id,
41% cov

Q6UVM5: sucrose alpha-glucosidase (EC 3.2.1.48) from Xanthomonas axonopodis

31% id,
48% cov

Psest_0862: Glycosidases
is similar to:
PaperBLAST

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

30% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory