Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 52 curated entries in PaperBLAST's database that match '3.5.1.1' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_4078: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D
is similar to:
PaperBLAST

A0A1I0U0N3: asparaginase (EC 3.5.1.1) from Pseudomonas otitidis

60% id,
99% cov

AO353_09960: L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens

53% id,
97% cov

Pf1N1B4_2023: L-asparaginase (EC 3.5.1.1) from Pseudomonas fluorescens

53% id,
97% cov

More...

Psest_0776: FOG: Ankyrin repeat
is similar to:
PaperBLAST

H0W0T5: asparaginase (EC 3.5.1.1) from Cavia porcellus

34% id,
24% cov

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

37% id,
11% cov

Psest_1457: FOG: Ankyrin repeat
is similar to:
PaperBLAST

ASPG_DIRIM / Q9U518: L-asparaginase; DiAsp; L-asparagine amidohydrolase; EC 3.5.1.1 from Dirofilaria immitis

26% id,
25% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory