Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 17 curated entries in PaperBLAST's database that match '3.5.3.12'.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_4291: agmatine deiminase
is similar to:
PaperBLAST

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

77% id,
99% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

75% id,
100% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

56% id,
100% cov

More...

Psest_4290: N-carbamoylputrescine amidase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

48% id,
99% cov

Psest_3321: Predicted amidohydrolase
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

24% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory