Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 12 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1214: Cytosine deaminase and related metal-dependent hydrolases
is similar to:

HUTF_PSEAE / Q9HU77: Formimidoylglutamate deiminase; Formiminoglutamate deiminase; N-formimino-L-glutamate deiminase; N-formimino-L-glutamate iminohydrolase; EC from Pseudomonas aeruginosa
Q9HU77: formimidoylglutamate deiminase (EC; formimidoylglutamase (EC from Pseudomonas aeruginosa

27% id,
93% cov

Ac3H11_2549: Formiminoglutamic iminohydrolase (EC from Acidovorax sp.

26% id,
87% cov

Psest_1208: guanine deaminase
is similar to:

PS417_01705: Formiminoglutamic iminohydrolase (EC from Pseudomonas simiae

30% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory