Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 37 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_4349: glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
is similar to:

AO353_04455: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Pseudomonas fluorescens

31% id,
99% cov

BPHYT_RS02735: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Burkholderia phytofirmans

31% id,
99% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC from Shewanella sp.

30% id,
99% cov


Psest_0853: 6-phosphogluconolactonase
is similar to:

GPI1 / O97439: glucosamine 6-phosphate isomerase 1 (EC from Giardia intestinalis

24% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory