Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 20 curated entries in PaperBLAST's database that match '3.7.1.2' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3512: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
is similar to:
PaperBLAST

Psest_3512: fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) from Pseudomonas stutzeri

100% id,
100% cov

SO1670: fumarylacetoacetate hydrolase (EC 3.7.1.2) from Shewanella oneidensis

70% id,
99% cov

K0A9N9: fumarylacetoacetase (EC 3.7.1.2) from Exiguobacterium antarcticum

26% id,
69% cov

Psest_3871: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)
is similar to:
PaperBLAST

A0A0D5YDA5: fumarylacetoacetase (EC 3.7.1.2) from Acinetobacter baumannii

48% id,
93% cov

A0A1B0ZSC0: fumarylacetoacetase (EC 3.7.1.2) from Phaeobacter gallaeciensis

38% id,
88% cov

A0A0M3SVN7: fumarylacetoacetase (EC 3.7.1.2) from Cupriavidus gilardii

36% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory