Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 35 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2075: Arginine/lysine/ornithine decarboxylases
is similar to:
PaperBLAST

Q5ZH57: ornithine decarboxylase (EC 4.1.1.17) from Oenococcus oeni

34% id,
99% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

33% id,
98% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

35% id,
92% cov

More...

Psest_3350: Diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCOR_TRYBB / P07805: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Trypanosoma brucei

32% id,
87% cov

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

31% id,
85% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

33% id,
80% cov

More...

Psest_3764: diaminopimelate decarboxylase
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

26% id,
90% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

26% id,
82% cov

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

31% id,
54% cov

More...

Psest_3366: arginine decarboxylase, biosynthetic
is similar to:
PaperBLAST

DCOR1_DROME / P40807: Ornithine decarboxylase 1; ODC; EC 4.1.1.17 from Drosophila melanogaster

24% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory