Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 12 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0333: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
is similar to:

IOLJ_BACSU / P42420: 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase; DKGP aldolase; EC from Bacillus subtilis
iolJ / P42420: 5-dehydro-2-deoxyphosphogluconate aldolase (EC from Bacillus subtilis

33% id,
99% cov

PGA1_c07220: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC from Phaeobacter inhibens

36% id,
75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory