Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 89 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3404: Glycine/serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

72% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

62% id,
95% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

37% id,
93% cov

Psest_2990: Threonine aldolase
is similar to:
PaperBLAST

LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei
ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei
O07051: L-allo-threonine aldolase (EC 4.1.2.49) from Aeromonas jandaei

59% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

55% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

44% id,
97% cov

More...

Psest_0333: fructose-bisphosphate aldolase, class II, Calvin cycle subtype
is similar to:
PaperBLAST

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

35% id,
100% cov

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli

35% id,
100% cov

GATY_ECOLI / P0C8J6: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
YegF / b2096: tagatose-1,6-bisphosphate aldolase 2 (EC 4.1.2.40) from Escherichia coli
gatY / P0C8J6: tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli

33% id,
100% cov

More...

Psest_2816: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

34% id,
85% cov

Psest_0890: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

34% id,
79% cov

Psest_4189: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

25% id,
90% cov

Psest_1515: dihydrodipicolinate synthase
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

27% id,
77% cov

NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida
Q51947: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

25% id,
77% cov

nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

24% id,
76% cov

Psest_0895: Threonine dehydrogenase and related Zn-dependent dehydrogenases
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

27% id,
76% cov

Psest_1276: Zn-dependent alcohol dehydrogenases
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

26% id,
53% cov

Psest_4316: ABC-type metal ion transport system, periplasmic component/surface antigen
is similar to:
PaperBLAST

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

27% id,
42% cov

Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from

28% id,
32% cov

Psest_0851: Transcriptional regulators
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

25% id,
42% cov

Psest_4317: zinc-binding alcohol dehydrogenase family protein
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

34% id,
23% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3004053-3005216 (frame -2) on Psest_Contig47.1
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum
Also see hits to annotated proteins above

33% id,
91% cov

4517168-4518208 (frame -3) on Psest_Contig47.1
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum
Also see hits to annotated proteins above

32% id,
30% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory