Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2014: Isocitrate lyase is similar to:	PaperBLAST
Psest_2014: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri	100% id, 100% cov
Q9I0K4: isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa	92% id, 100% cov
A8C781: isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii	85% id, 100% cov
A8C5K8: isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea	74% id, 100% cov
Q93R40: isocitrate lyase (EC 4.1.3.1) from Colwellia maris	74% id, 100% cov
ACEA_HYPME / O50078: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum	57% id, 96% cov
Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens	27% id, 78% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	30% id, 64% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	29% id, 65% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	29% id, 63% cov
ACEA_YEAST / P28240: Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae	22% id, 78% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	28% id, 57% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	24% id, 61% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	26% id, 58% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	27% id, 53% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	30% id, 47% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	30% id, 46% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	31% id, 45% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	31% id, 44% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	33% id, 40% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	27% id, 48% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	29% id, 43% cov
Q97YI8: isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus	24% id, 45% cov
ACEA_EMENI / P28298: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans acuD / PDB\|1DQU_A: isocitrate lyase; EC 4.1.3.1 from Emericella nidulans	25% id, 40% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	29% id, 32% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	32% id, 25% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	27% id, 29% cov
ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis	25% id, 29% cov
Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus	30% id, 24% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	29% id, 25% cov
ACEA2_MYCTE / H8F3R6: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis ACEA2_MYCTO / Q8VJU4: Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis	24% id, 23% cov
ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans	25% id, 22% cov
ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa	26% id, 20% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	39% id, 12% cov
ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum	33% id, 13% cov
Q9P8Q7: isocitrate lyase (EC 4.1.3.1) from Candida albicans	31% id, 13% cov
Q5YLB6: isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis	32% id, 13% cov
ACEA_YARLI / P41555: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica	26% id, 15% cov
ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis	30% id, 12% cov
ACEA_PYRO7 / P0CT06: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Pyricularia oryzae P0CT06: isocitrate lyase (EC 4.1.3.1) from Pyricularia oryzae	30% id, 12% cov
GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans	23% id, 16% cov
Q4HYR2: isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum	28% id, 12% cov
ACEA_ORYSJ / Q6Z6M4: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa	48% id, 7% cov
ACEA_BRANA / P25248: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus	41% id, 7% cov
ACEA_ARATH / P28297: Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana icl / P28297: isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana	41% id, 7% cov
More...

Psest_2321: methylisocitrate lyase is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	35% id, 91% cov
ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii	35% id, 53% cov
A0A3S5YB92: isocitrate lyase (EC 4.1.3.1) from Rhodococcus hoagii	35% id, 46% cov

Psest_0551: PEP phosphonomutase and related enzymes is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus	32% id, 72% cov
ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli	26% id, 47% cov
Ac3H11_2831: Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp.	25% id, 46% cov
Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis	36% id, 20% cov
SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis	36% id, 20% cov
BWI76_RS01665: Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis	36% id, 19% cov
Shew_1276: Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica	35% id, 19% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

604541-605563 (frame +2) on Psest_Contig47.1 is similar to:	PaperBLAST
Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus Also see hits to annotated proteins above	30% id, 83% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory