Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 17 curated entries in PaperBLAST's database that match '4.1.3.4' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1079: Isopropylmalate/homocitrate/citramalate synthases
is similar to:
PaperBLAST

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

78% id,
99% cov

mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii
mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii

61% id,
98% cov

HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus

62% id,
90% cov

More...

Psest_2661: Isopropylmalate/homocitrate/citramalate synthases
is similar to:
PaperBLAST

HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis

45% id,
99% cov

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

40% id,
95% cov

HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus
P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus

40% id,
90% cov

More...

Psest_1056: 2-isopropylmalate synthase, bacterial type
is similar to:
PaperBLAST

HMGCL_RAT / P97519: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Rattus norvegicus
P97519: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Rattus norvegicus

22% id,
85% cov

HMGCL_HUMAN / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Homo sapiens
HMGCL / P35914: Hydroxymethylglutaryl-CoA lyase, mitochondrial (EC 4.1.3.4) from Homo sapiens
P35914: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Homo sapiens

22% id,
85% cov

HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus

21% id,
85% cov

Psest_1082: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

32% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory