Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 3 curated entries in PaperBLAST's database that match '4.2.1.100' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3109: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

35% id,
98% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

28% id,
97% cov

Psest_2437: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

33% id,
100% cov

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

33% id,
100% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

29% id,
92% cov

Psest_1082: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

26% id,
100% cov

Psest_4235: 3-hydroxyacyl-CoA dehydrogenase
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

33% id,
77% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

26% id,
91% cov

Psest_2076: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

25% id,
95% cov

Psest_2439: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

25% id,
91% cov

bamR / Q2LXU6: cyclohexa-1,5-dienecarbonyl-CoA hydratase monomer (EC 4.2.1.100) from Syntrophus aciditrophicus

26% id,
66% cov

Psest_2654: fatty oxidation complex, alpha subunit FadB
is similar to:
PaperBLAST

D3RXI0: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Ferroglobus placidus

30% id,
76% cov

O87873: cyclohexa-1,5-dienecarbonyl-CoA hydratase (EC 4.2.1.100) from Thauera aromatica

25% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory