Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 52 curated entries in PaperBLAST's database that match '4.2.1.12'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1892: 6-phosphogluconate dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

79% id,
100% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

63% id,
100% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

58% id,
99% cov

Psest_0849: 6-phosphogluconate dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

78% id,
100% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

65% id,
100% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

57% id,
99% cov

Psest_0063: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

61% id,
99% cov

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

62% id,
97% cov

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

54% id,
95% cov

More...

Psest_2636: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

54% id,
97% cov

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

53% id,
98% cov

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

46% id,
97% cov

More...

Psest_0234: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

31% id,
82% cov

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

29% id,
88% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

31% id,
57% cov

More...

Psest_0062: tryptophan synthase, alpha subunit
is similar to:
PaperBLAST

A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis

38% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory